PDBsum entry 2j5f

Pore analysis for: 2j5f calculated with

MOLE 2.0

PDB id

2j5f

Pores calculated on whole structure

Pores calculated excluding ligands

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visualization
with HETATM:

without HETATM:

1 pore, coloured by radius

6 pores, coloured by radius

6 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.89

2.57

52.3

-0.84

-0.12

22.5

65

6

3

0

7

2

2

1

DJK 3021 A

2

1.14

1.54

57.8

-0.43

-0.04

19.2

72

7

3

2

10

2

1

2

DJK 3021 A

3

2.16

2.36

60.7

-1.10

-0.21

22.5

71

7

6

1

4

3

0

0

4

1.18

1.81

62.1

-0.07

-0.10

14.0

75

3

5

2

16

0

3

1

DJK 3021 A

5

1.36

1.66

90.4

-0.01

-0.07

14.7

73

4

9

2

15

2

2

1

DJK 3021 A

6

1.18

1.54

95.3

-0.60

-0.23

18.8

77

5

9

4

12

2

1

2

DJK 3021 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.