 |
PDBsum entry 2j4l
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2j4l calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2j4l
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
4 pores,
coloured by radius |
|
6 pores,
coloured by radius
|
6 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.19 |
1.26 |
29.5 |
-0.86 |
-0.48 |
12.2 |
87 |
|
1 |
1 |
2 |
1 |
1 |
0 |
0 |
|
|
 |
|
2 |
 |
1.19 |
1.27 |
71.3 |
-1.58 |
-0.66 |
17.7 |
87 |
6 |
2 |
6 |
1 |
1 |
0 |
0 |
|
|
3 |
 |
2.17 |
2.45 |
89.9 |
-2.43 |
-0.56 |
27.8 |
87 |
10 |
6 |
6 |
6 |
0 |
0 |
0 |
|
|
4 |
 |
2.52 |
2.58 |
156.1 |
-2.16 |
-0.44 |
25.5 |
82 |
20 |
7 |
7 |
6 |
1 |
4 |
0 |
UTP 1227 L MG 1228 L
|
|
5 |
 |
0.88 |
1.23 |
197.9 |
-2.23 |
-0.57 |
24.4 |
81 |
15 |
9 |
9 |
2 |
1 |
2 |
0 |
|
 |
6 |
 |
2.78 |
2.98 |
52.2 |
-1.33 |
-0.42 |
17.0 |
78 |
4 |
3 |
1 |
4 |
0 |
2 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program