PDBsum entry 2j2u Go to PDB code:  Tunnel analysis for: 2j2u calculated with MOLE 2.0 PDB id 2j2u Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 1.20 22.6 -1.01 -0.80 9.8 82 1 2 3 0 1 0 0  GSQ 1244 A 2 1.15 1.32 18.7 -0.13 -0.16 9.1 74 1 1 1 3 1 1 1   3 1.36 1.74 25.3 -0.32 -0.06 13.9 79 1 2 1 3 1 2 0   4 1.68 1.84 16.9 -0.85 -0.23 17.8 73 1 1 0 2 2 0 2   5 1.68 1.85 20.4 -1.35 -0.09 24.0 71 3 1 1 2 2 0 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.