spacer
spacer

PDBsum entry 2j25

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 2j25 calculated with MOLE 2.0 PDB id
2j25
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
11 tunnels, coloured by tunnel radius 12 tunnels, coloured by tunnel radius 12 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.44 17.1 -0.56 -0.29 10.2 87 3 0 2 4 1 0 0  
2 1.44 19.5 -0.38 -0.37 7.3 87 2 0 3 4 1 0 0  
3 1.44 19.9 -0.34 -0.27 11.1 81 1 0 1 2 2 0 0  
4 1.41 16.9 -0.29 -0.25 8.9 87 3 0 2 4 1 0 0  
5 1.42 19.2 -0.50 -0.39 7.6 87 2 0 3 4 1 0 0  
6 1.43 19.9 -0.34 -0.29 10.9 81 1 0 1 2 2 0 0  
7 1.40 10.3 0.81 0.05 2.1 75 0 0 0 5 1 0 0  
8 1.54 12.5 0.89 0.20 12.8 76 0 3 0 4 0 1 0  
9 1.68 10.3 0.81 0.08 2.1 71 0 0 0 4 1 0 0  
10 1.68 5.4 -1.02 -0.37 14.4 98 1 0 1 1 0 0 0  
11 1.70 5.6 0.07 -0.18 11.4 101 1 0 1 1 0 0 0  
12 1.32 7.2 -1.22 -0.78 10.9 100 0 2 2 1 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer