PDBsum entry 2j0l

Tunnel analysis for: 2j0l calculated with

MOLE 2.0

PDB id

2j0l

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

1 tunnel, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.21

1.31

16.3

1.21

0.71

4.8

75

0

1

1

5

3

1

0

2

1.23

1.44

17.1

2.15

0.81

1.4

84

0

0

1

7

2

0

0

3

1.26

1.26

19.7

-0.13

-0.27

9.4

78

1

2

2

1

1

0

0

MG 1688 A ANP 1689 A

4

1.25

1.51

20.0

-1.30

-0.60

16.6

83

2

2

2

1

0

0

0

MG 1688 A ANP 1689 A

5

1.26

1.26

23.6

-0.52

-0.31

14.3

82

3

2

3

1

1

0

0

PTR 577 A MG 1688 A

6

1.25

1.51

28.1

-1.91

-0.43

22.4

78

4

2

4

1

1

0

0

MG 1688 A ANP 1689 A

7

1.24

1.51

32.9

0.16

-0.21

9.6

80

2

2

2

3

0

1

0

MG 1688 A ANP 1689 A

8

1.26

1.51

35.2

-1.10

-0.55

17.2

88

1

3

4

4

0

0

0

MG 1688 A ANP 1689 A

9

1.14

1.48

52.8

-0.54

-0.23

13.9

79

4

4

3

6

3

0

0

MG 1688 A ANP 1689 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.