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PDBsum entry 2ix1

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Top Page protein dna_rna metals pores links
Pore analysis for: 2ix1 calculated with MOLE 2.0 PDB id
2ix1
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.38 3.46 27.2 -2.78 -0.62 34.5 85 5 3 1 2 0 0 0  DA 6 B DA 7 B DA 8 B
2 2.25 2.44 42.1 -2.24 -0.47 27.8 78 6 3 2 1 3 1 0  DA 7 B DA 8 B DA 10 B DA 13 B
3 2.28 2.46 47.5 -1.90 -0.49 21.4 82 7 2 3 2 2 1 0  DA 6 B DA 7 B DA 8 B DA 10 B DA 13 B
4 1.34 1.33 57.7 -1.91 -0.63 24.8 83 8 5 2 2 0 1 0  DA 4 B DA 5 B DA 6 B DA 7 B DA 8 B
5 1.72 1.72 62.6 -1.74 -0.64 22.0 80 3 4 2 3 0 0 0  DA 1 B DA 3 B DA 4 B DA 5 B DA 6 B
6 1.30 1.30 73.0 -1.37 -0.56 17.2 82 6 5 3 2 2 2 0  DA 4 B DA 5 B DA 6 B DA 7 B DA 8 B DA 10 B DA 13 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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