PDBsum entry 2itx

Tunnel analysis for: 2itx calculated with

MOLE 2.0

PDB id

2itx

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

9 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.20

1.83

21.0

0.06

0.20

10.3

89

2

1

2

5

1

0

0

2

1.31

1.76

22.1

-0.58

-0.18

15.0

83

3

3

2

3

1

0

0

3

1.32

1.47

22.8

-0.69

0.06

15.2

80

3

2

2

3

2

0

0

4

1.19

1.79

23.3

-0.03

0.12

11.2

86

2

1

1

5

1

0

0

5

1.32

1.48

24.4

-0.60

-0.23

15.2

79

3

3

1

3

1

0

0

6

1.31

1.56

25.1

-0.75

-0.02

15.9

77

3

2

1

3

2

0

0

7

1.29

1.83

32.9

0.25

0.06

9.9

80

3

2

2

3

2

0

0

8

1.28

1.78

35.2

0.18

0.01

10.7

77

3

2

1

3

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.