PDBsum entry 2isd Go to PDB code:  Tunnel analysis for: 2isd calculated with MOLE 2.0 PDB id 2isd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 1.52 19.3 -2.17 -0.44 33.5 85 4 5 0 3 0 0 0   2 1.09 1.21 32.0 -2.13 -0.46 26.6 76 5 4 1 2 1 1 0   3 1.24 1.64 19.1 -1.72 -0.43 19.8 82 2 1 1 2 1 0 0   4 1.59 1.63 16.5 -1.42 -0.50 28.6 74 1 4 0 3 0 0 0   5 1.27 1.62 15.4 -1.22 -0.49 19.9 95 1 2 2 3 0 0 0   6 1.40 1.40 18.2 -1.39 -0.45 22.8 91 2 4 2 3 0 0 0   7 1.26 2.62 21.8 -0.92 -0.28 20.1 93 1 2 2 3 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.