spacer
spacer

PDBsum entry 2ic3

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2ic3 calculated with MOLE 2.0 PDB id
2ic3
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
14 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.29 1.34 34.7 0.79 0.17 6.4 94 2 0 4 6 0 0 0  
2 1.41 1.71 44.0 -1.58 -0.57 17.1 86 6 3 4 2 0 0 0  
3 1.28 1.52 45.3 -0.81 -0.48 13.6 79 4 2 3 3 0 2 0  
4 1.72 2.92 50.6 -2.53 -0.47 28.1 77 6 3 3 0 1 1 0  
5 1.34 2.17 58.4 0.23 0.22 5.9 78 3 0 4 8 4 1 0  
6 1.36 1.41 70.0 -0.17 0.20 8.8 71 5 2 4 9 7 1 0  
7 1.20 1.83 86.8 0.22 0.13 4.5 77 3 0 5 12 5 1 0  
8 1.34 1.99 101.7 -1.87 -0.36 20.1 74 9 6 6 3 6 0 0  
9 1.91 2.07 113.0 -1.71 -0.30 19.7 80 12 5 6 4 5 1 0  
10 1.35 1.47 117.6 -1.27 -0.16 20.7 75 11 6 4 7 6 1 0  
11 1.68 3.03 138.7 -1.72 -0.30 19.6 77 13 7 4 5 5 2 0  
12 1.33 1.42 160.2 -1.39 -0.38 12.1 80 11 5 8 8 7 4 0  
13 1.34 2.17 164.8 -1.14 -0.28 13.0 77 10 7 6 11 8 4 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer