PDBsum entry 2ibk Go to PDB code:  Tunnel analysis for: 2ibk calculated with MOLE 2.0 PDB id 2ibk Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.39 29.9 -0.52 -0.36 10.0 88 4 0 1 5 1 0 0  DT 14 D DT 105 E DG 106 E DA 108 E DT 109 E DC 110 E 2 1.21 1.37 35.0 -1.45 -0.42 17.8 89 5 1 3 5 1 0 0  DT 14 D DT 105 E DG 106 E DA 108 E BAP 1106 E 3 1.21 1.37 35.3 -0.58 -0.25 13.0 85 3 2 0 6 2 0 0  POP 405 A DT 14 D DT 105 E 4 1.23 1.38 39.7 -0.57 -0.39 7.3 84 2 1 1 6 3 0 0  DA 13 D DT 14 D DT 105 E DG 106 E DA 108 E DT 109 E DC 110 E DC 111 E 5 1.24 1.38 47.6 -0.41 -0.56 6.7 87 3 0 1 5 1 0 0  DG 9 D DA 10 D DT 11 D DT 12 D DA 13 D DT 14 D DT 105 E DG 106 E DA 108 E DT 109 E DC 110 E DC 111 E DT 112 E DT 113 E Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.