 |
PDBsum entry 2i0y
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2i0y calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2i0y
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
4 tunnels,
coloured by tunnel radius |
|
7 tunnels,
coloured by
tunnel radius
|
7 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.17 |
1.57 |
23.0 |
-0.96 |
-0.22 |
22.1 |
84 |
|
2 |
2 |
1 |
5 |
1 |
0 |
0 |
|
|
 |
|
2 |
 |
1.19 |
1.57 |
24.3 |
-1.03 |
-0.23 |
22.5 |
84 |
2 |
2 |
1 |
5 |
1 |
0 |
0 |
|
|
3 |
 |
1.32 |
2.47 |
32.0 |
-0.07 |
-0.01 |
16.0 |
82 |
2 |
3 |
1 |
8 |
1 |
0 |
0 |
5CN 1000 A
|
|
4 |
 |
1.30 |
2.11 |
33.3 |
-0.20 |
-0.06 |
16.7 |
82 |
2 |
3 |
1 |
8 |
1 |
0 |
0 |
5CN 1000 A
|
|
5 |
 |
1.38 |
1.38 |
16.9 |
0.81 |
0.07 |
4.3 |
64 |
0 |
1 |
1 |
3 |
2 |
0 |
0 |
|
|
6 |
 |
1.31 |
1.65 |
15.8 |
0.32 |
0.11 |
3.3 |
71 |
1 |
0 |
2 |
4 |
2 |
0 |
0 |
|
 |
7 |
 |
1.31 |
1.66 |
16.2 |
0.47 |
0.20 |
3.1 |
66 |
1 |
0 |
2 |
4 |
3 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program