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PDBsum entry 2hvh

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2hvh calculated with MOLE 2.0 PDB id
2hvh
Pores calculated on whole structure Pores calculated excluding ligands

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5 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.00 2.34 27.6 -0.71 -0.19 11.3 80 4 1 3 4 1 1 0  
2 2.86 2.96 37.4 -3.19 -0.44 37.5 83 8 4 2 1 1 1 0  DCT 883 A DG 24 B DA 25 B DC 26 B DT 27 B DC 28 B
DDG 29 B DT 2 C 6OG 3 C DC 4 C DA 6 C
3 2.84 2.93 35.3 -2.76 -0.31 37.1 82 7 4 1 2 1 1 0  DCT 881 D DC 26 E DT 27 E DC 28 E DDG 29 E 6OG 3
F DC 4 F
4 1.31 1.55 45.2 -2.09 -0.29 28.3 85 8 3 3 3 2 1 0  DCT 881 D DC 28 E DDG 29 E DT 2 F 6OG 3 F DC 4 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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