PDBsum entry 2hnd Go to PDB code:  Tunnel analysis for: 2hnd calculated with MOLE 2.0 PDB id 2hnd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.34 1.55 19.8 0.73 0.28 7.8 69 1 1 0 6 2 2 0   2 1.27 1.56 16.0 -0.26 -0.03 13.6 77 0 2 1 4 2 0 0   3 1.42 2.94 16.6 -1.61 -0.47 23.8 77 2 2 0 2 0 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.