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PDBsum entry 2hd6

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Cleft analysis for: 2hd6 PDB id
2hd6
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 1988.72 1.79 62.61 7 10.86 2 12.98 1 7 5 5 3 4 7 0  
2 1110.80 0.00 72.08 1 9.95 3 7.40 2 5 3 6 10 5 2 0 BOS 266[A], GOL 264[A] (24 atoms)
3 859.78 0.00 57.78 8 5.54 8 7.25 3 3 3 3 5 1 5 0  
4 980.86 0.00 67.30 3 6.52 7 7.13 4 6 3 4 7 1 3 0  
5 587.25 0.00 56.24 9 3.67 9 6.47 6 5 1 1 3 5 1 0  
6 543.38 0.00 66.08 4 7.28 5 6.07 8 3 3 5 2 2 4 0  
7 370.83 0.00 63.11 6 6.62 6 6.37 7 1 2 1 3 2 2 0  
8 297.84 0.00 63.75 5 9.52 4 6.74 5 2 2 3 1 2 0 0  
9 400.78 0.00 52.78 10 3.38 10 5.79 9 1 2 2 3 0 2 1 MBO 265[A] (5 atoms)
10 342.98 0.00 67.38 2 11.43 1 0.00 10 3 2 0 3 0 0 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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