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PDBsum entry 2gvy

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2gvy calculated with MOLE 2.0 PDB id
2gvy
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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19 tunnels, coloured by tunnel radius 13 tunnels, coloured by tunnel radius 13 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.42 17.7 -2.28 -0.75 15.7 91 2 1 4 0 0 1 0  1012 GLC A
2 2.00 22.9 -1.80 -0.76 14.8 83 3 2 5 0 0 2 0  
3 1.95 6.3 1.23 -0.01 1.6 105 1 0 1 3 0 0 0  
4 1.65 10.2 0.30 0.15 14.1 82 1 1 0 3 0 1 0  
5 1.37 10.7 0.20 0.21 17.0 84 1 1 0 4 0 1 0  
6 1.67 7.2 -1.09 -0.51 19.6 78 2 1 0 0 0 0 1  
7 1.60 9.4 -0.47 -0.03 20.0 84 1 1 0 4 0 2 0  
8 1.62 6.6 -1.02 -0.33 11.4 66 1 1 0 1 2 0 0  
9 1.52 9.1 -0.96 -0.06 6.3 63 1 0 0 0 2 0 0  
10 1.57 10.2 -0.91 -0.45 10.1 66 1 2 0 1 2 0 0  
11 1.27 4.7 0.69 -0.05 2.0 86 0 0 0 4 1 0 0  
12 1.69 4.8 -0.75 -0.40 17.9 71 2 1 0 0 0 0 1  
13 1.52 5.5 -1.03 -0.12 7.7 49 1 0 0 0 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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