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PDBsum entry 2gvy

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Top Page protein ligands metals Protein-protein interface(s) clefts links
Cleft analysis for: 2gvy PDB id
2gvy
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 10813.08 4.24 67.77 3 14.93 1 20.79 1 23 29 39 27 19 22 4 BGC 1002[A], GLC 1001[A], GLC 
1000[A], GLC 999[A], GLC 1004[A],
GLC 1011[A], GLC 1012[A] (60 atoms)
2 2550.23 0.00 61.10 6 10.09 4 11.81 2 6 3 12 13 3 7 2  
3 2345.20 0.00 66.11 4 10.50 2 9.65 4 6 9 7 7 11 3 1 GLC 1000[B], GLC 999[B], BGC 
1002[B], GLC 1001[B] (41 atoms)
4 1982.39 0.00 60.56 7 10.33 3 10.35 3 5 2 9 10 3 5 2  
5 637.88 0.00 62.14 5 6.27 8 7.89 6 1 2 5 4 1 1 0  
6 631.12 0.00 59.66 9 7.96 7 7.45 7 1 2 5 4 1 1 0  
7 488.11 0.00 71.48 2 8.02 6 8.95 5 1 1 5 4 3 1 0 NDG 500[B] (5 atoms)
8 439.17 0.00 74.21 1 9.84 5 6.29 9 0 1 5 4 3 1 0 NAG 500[A] (5 atoms)
9 360.70 0.00 60.24 8 5.12 9 7.07 8 0 0 6 3 0 1 2  
10 354.80 0.00 59.01 10 3.25 10 5.66 10 1 0 7 3 0 1 2  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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