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PDBsum entry 2gv9

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2gv9 calculated with MOLE 2.0 PDB id
2gv9
Pores calculated on whole structure Pores calculated excluding ligands

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15 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.36 3.53 45.4 -0.81 0.18 24.4 86 8 1 4 3 2 0 0  
2 4.05 6.53 46.9 -3.48 -0.46 44.1 78 11 4 1 1 0 2 0  SO4 1237 B
3 1.28 1.28 53.7 -0.80 -0.31 14.5 75 2 3 1 5 1 1 0  
4 1.15 1.40 68.6 -1.38 -0.21 24.3 78 8 5 3 5 4 1 1  
5 1.78 1.89 85.0 -0.73 -0.05 19.4 77 7 5 3 9 2 1 0  
6 1.81 1.92 86.9 -0.87 -0.16 17.3 78 6 6 4 7 1 1 0  
7 1.12 1.10 87.0 -1.60 -0.25 25.4 83 11 5 4 7 1 1 0  SO4 1237 B
8 1.77 2.49 96.7 -2.16 -0.40 25.4 77 12 5 5 5 4 2 0  SO4 1237 B
9 2.24 2.95 106.1 -2.39 -0.42 28.4 82 8 5 3 3 1 2 0  
10 1.76 1.91 110.3 -1.26 -0.18 24.2 77 13 6 4 12 2 2 0  SO4 1237 B
11 2.27 2.93 115.3 -2.60 -0.44 32.2 78 14 6 4 5 1 3 0  SO4 1237 B
12 1.30 1.29 139.9 -1.77 -0.51 23.0 81 10 9 6 6 2 3 0  
13 1.40 1.40 178.3 -1.05 -0.32 19.0 80 11 10 9 13 4 1 0  
14 1.32 1.32 183.3 -1.94 -0.52 23.5 81 12 11 9 6 3 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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