PDBsum entry 2gs7

Pore analysis for: 2gs7 calculated with

MOLE 2.0

PDB id

2gs7

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

4 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.19

1.19

36.3

-0.03

-0.19

11.8

75

4

1

0

7

2

1

0

IOD 407 B

2

1.45

1.64

45.5

-0.07

-0.16

12.1

82

4

2

2

10

2

1

1

MG 201 B ANP 302 B

3

1.17

1.17

47.1

-0.98

-0.36

17.8

80

6

2

2

7

1

0

1

MG 201 B ANP 302 B IOD 407 B

4

1.22

1.22

55.5

-0.97

-0.33

18.3

81

7

4

2

7

1

0

1

MG 202 A ANP 301 A IOD 406 A

5

1.29

2.09

72.7

-0.22

-0.08

14.3

75

6

6

1

12

3

4

1

MG 201 B ANP 302 B IOD 405 B

6

1.41

1.64

73.5

0.23

-0.09

11.7

78

7

4

2

13

2

1

3

ANP 301 A MG 201 B ANP 302 B

7

1.19

1.19

74.3

-0.74

-0.18

17.9

73

8

6

1

9

2

3

1

MG 201 B ANP 302 B IOD 405 B IOD 407 B

8

1.22

1.23

75.2

-0.36

-0.22

15.7

76

9

4

2

10

1

0

3

ANP 301 A MG 201 B ANP 302 B IOD 407 B

9

1.23

1.23

88.9

-0.92

-0.34

19.0

77

11

6

2

9

1

0

2

MG 202 A ANP 301 A IOD 406 A ANP 302 B

10

1.22

1.22

91.2

-0.74

-0.30

17.7

77

11

6

2

12

3

1

1

MG 202 A ANP 301 A IOD 406 A MG 201 B ANP 302 B

11

1.22

1.22

92.9

-1.21

-0.42

20.7

76

13

6

2

9

2

0

1

MG 202 A ANP 301 A IOD 406 A MG 201 B ANP 302 B
IOD 407 B

12

1.16

1.66

106.7

-1.59

-0.35

22.9

75

12

6

4

7

2

4

0

MG 202 A ANP 301 A IOD 406 A IOD 405 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.