spacer
spacer

PDBsum entry 2glm

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2glm calculated with MOLE 2.0 PDB id
2glm
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.24 2.76 53.0 -1.59 -0.34 11.5 79 0 5 8 6 3 7 0  
2 1.25 2.75 55.3 -1.63 -0.34 10.3 79 0 5 8 6 3 7 0  
3 1.22 2.92 56.7 -1.71 -0.33 13.3 79 0 6 8 6 3 7 0  
4 1.25 2.98 68.4 -1.82 -0.35 15.6 80 3 6 8 7 3 7 0  
5 1.22 1.22 39.0 0.95 0.33 4.9 79 2 1 0 12 4 1 0  CL 1003 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer