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PDBsum entry 2gii

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Top Page protein dna_rna Protein-protein interface(s) tunnels links
Tunnel analysis for: 2gii calculated with MOLE 2.0 PDB id
2gii
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.33 7.9 -0.75 -0.59 11.2 78 1 1 0 1 1 0 0  
2 1.46 5.4 -2.32 -0.64 31.4 78 2 2 1 0 1 0 0  
3 1.38 11.5 -0.85 0.23 12.3 66 1 1 0 1 2 1 0  
4 1.37 12.0 -0.41 0.13 9.0 64 1 1 0 2 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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