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PDBsum entry 2gii

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Top Page protein dna_rna Protein-protein interface(s) clefts links
Cleft analysis for: 2gii PDB id
2gii
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 13016.53 4.87 67.48 3 13.45 3 21.10 1 24 15 34 20 21 5 0  
2 2670.47 0.00 66.51 4 12.97 4 13.22 3 6 4 7 8 4 0 0  
3 1636.88 0.00 62.12 8 12.42 5 15.01 2 1 2 6 9 3 0 1  
4 1377.84 0.00 66.34 5 8.88 7 11.51 5 3 4 7 7 4 0 0  
5 1409.06 0.00 82.65 1 15.45 1 13.17 4 5 7 8 8 3 1 0  
6 1046.67 0.00 74.83 2 14.54 2 11.33 6 4 6 3 3 2 1 0  
7 980.86 0.00 58.34 10 9.38 6 7.65 8 4 3 6 3 2 1 0  
8 711.28 0.00 64.96 6 8.68 8 6.70 10 2 4 4 1 7 2 0  
9 423.14 0.00 58.59 9 4.81 10 8.61 7 1 2 3 3 2 2 0  
10 496.97 0.00 64.63 7 6.74 9 6.79 9 2 2 4 6 4 0 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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