PDBsum entry 2g5b

Pore analysis for: 2g5b calculated with

MOLE 2.0

PDB id

2g5b

Pores calculated on whole structure

Pores calculated excluding ligands

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19 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.02

2.02

30.5

-0.74

-0.68

2.6

97

0

0

5

2

0

2

0

2

2.39

2.39

31.0

-0.70

-0.62

4.8

91

0

2

2

3

0

2

0

3

2.40

2.40

31.5

-0.47

-0.67

2.6

94

0

0

4

3

0

2

0

NDG 2 N

4

2.95

4.34

33.7

-1.23

-0.63

10.5

81

2

2

3

0

1

3

0

5

2.73

2.84

39.0

-1.18

-0.53

8.4

80

2

2

1

1

1

4

0

6

2.17

2.17

40.0

-0.95

-0.59

4.4

83

0

1

3

2

1

4

0

7

2.70

2.77

41.8

-1.13

-0.66

10.4

91

2

3

4

3

0

2

0

NAG 1 O NAG 2 O BMA 3 O

8

2.87

2.87

52.5

-1.28

-0.66

11.5

83

2

4

4

2

1

3

0

NAG 1 O NAG 2 O BMA 3 O

9

1.84

1.84

57.3

-0.60

-0.51

9.6

93

2

3

6

3

1

0

0

NAG 1 N NDG 2 N

10

2.04

2.04

81.2

-0.77

-0.65

5.7

94

2

2

9

6

0

4

0

NAG 1 P NAG 2 P MAN 3 P

11

2.34

2.36

85.4

-1.30

-0.62

12.9

89

3

7

10

3

1

2

0

NAG 1 M NAG 2 M BMA 3 M NDG 2 N

12

2.05

2.05

87.4

-0.86

-0.66

7.0

88

2

4

9

4

1

5

0

NAG 1 P NAG 2 P MAN 3 P

13

2.91

2.91

95.3

-1.03

-0.62

9.8

82

4

6

6

3

2

6

0

NAG 1 P NAG 2 P MAN 3 P

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.