PDBsum entry 2fmq Go to PDB code:  Pore analysis for: 2fmq calculated with MOLE 2.0 PDB id 2fmq Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.92 2.07 26.4 -1.52 -0.74 16.7 83 3 1 1 0 0 0 0  DC 1 B DG 3 B DA 4 B DC 5 B DA 6 B DG 7 B DC 8 B DC 3 D DG 4 D DG 5 D 2 2.28 2.40 35.8 -1.64 -0.29 19.3 95 3 2 4 3 1 0 0  DUP 338 A DC 5 B DA 6 B DG 7 B DC 8 B DC 10 C 3 2.28 2.43 36.8 -2.74 -0.49 25.8 89 4 4 4 1 1 0 0  DUP 338 A DC 5 B DA 6 B DG 7 B DC 8 B DC 10 C 4 1.89 1.89 46.7 -0.82 -0.59 8.4 95 2 0 3 2 0 0 0  DC 8 B DA 11 B DT 12 B DC 13 B DA 14 B DT 6 C DG 7 C 5 2.28 2.41 48.0 -2.45 -0.40 25.9 89 5 4 4 1 1 0 0  DUP 338 A DC 5 B DA 6 B DG 7 B DC 8 B DT 6 C DC 10 C 6 2.13 2.31 82.4 -1.91 -0.47 19.4 87 7 5 6 2 1 1 0  DUP 338 A DA 11 B DT 12 B DC 13 B DG 7 C DC 8 C DG 9 C DC 10 C 7 1.51 1.60 84.7 -1.39 -0.39 15.5 91 7 3 6 4 1 1 0  DUP 338 A DA 11 B DT 12 B DC 13 B DG 7 C DC 8 C DG 9 C DC 10 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.