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PDBsum entry 2fkf

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Isomerase PDB id
2fkf
Contents
Protein chain
455 a.a.
Ligands
G16
Metals
_ZN
Waters ×296

References listed in PDB file
Key reference
Title The reaction of phosphohexomutase from pseudomonas aeruginosa: structural insights into a simple processive enzyme.
Authors C.Regni, A.M.Schramm, L.J.Beamer.
Ref. J Biol Chem, 2006, 281, 15564-15571. [DOI no: 10.1074/jbc.M600590200]
PubMed id 16595672
Abstract
The enzyme phosphomannomutase/phosphoglucomutase (PMM/PGM) from Pseudomonas aeruginosa catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars. The reaction entails two phosphoryl transfers, with an intervening 180 degrees reorientation of the reaction intermediate (e.g. glucose 1,6-bisphosphate) during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is, thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Structural characterization of two PMM/PGM-intermediate complexes with glucose 1,6-bisphosphate provides new insights into the reaction catalyzed by the enzyme, including the reorientation of the intermediate. Kinetic analyses of site-directed mutants prompted by the structural studies reveal active site residues critical for maintaining association with glucose 1,6-bisphosphate during its unique dynamic reorientation in the active site of PMM/PGM.
Figure 2.
FIGURE 2. The final 2 F[o] – F[c] maps (blue, contoured at 1. 0 ) for G16P in the dephospho-PMM/PGM·G16P complex (a) and phospho-PMM/PGM·G16P complex (b). Electron density for Arg-15 and Arg-20 is also shown for this complex.
Figure 3.
FIGURE 3. a, superposition of the protein backbones for apo-PMM/PGM (Apo) and its complexes with G16P. DP, dephospho-PMM/PGM; P, phospho-PMM/PGM. Domains 1–4 are shown in green, yellow, red, and blue, respectively. G16P as bound to phosphoenzyme is shown in magenta and to dephosphoenzyme is shown in cyan. b, a close-up view of G16P in the active site of the two PMM/PGM-intermediate complexes showing their different relative binding positions. The protein backbone is shown in solid (dephosphoenzyme) and semitransparent (phosphoenzyme). Shown are hydrogen bonds between G16P and dephospho-PMM/PGM (c) and phospho-PMM/PGM (d). Protein residues that contact the intermediate are shown as sticks; water molecules are shown as blue spheres.
The above figures are reprinted by permission from the ASBMB: J Biol Chem (2006, 281, 15564-15571) copyright 2006.
PROCHECK
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 Headers

 

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