PDBsum entry 2fkd Go to PDB code:  Pore analysis for: 2fkd calculated with MOLE 2.0 PDB id 2fkd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   26 pores, coloured by radius 26 pores, coloured by radius 26 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.39 2.80 25.7 -0.93 -0.05 24.5 75 3 5 0 2 1 1 1   2 1.32 1.31 29.6 -1.60 -0.45 27.0 85 3 5 2 2 0 1 0   3 1.66 1.86 31.6 -1.55 -0.51 24.9 84 4 5 3 2 1 0 0   4 1.14 1.26 33.9 -1.61 -0.45 27.5 81 4 6 1 2 1 1 0   5 1.31 1.30 35.0 -1.64 -0.66 20.7 89 5 2 2 1 1 0 0   6 1.22 2.16 35.4 -1.73 -0.61 25.4 91 5 4 2 3 0 0 0   7 1.34 2.51 54.3 -1.84 -0.34 24.5 81 4 5 2 5 2 0 0   8 2.35 2.65 63.6 -1.78 -0.58 21.6 88 8 2 4 2 1 0 0   9 2.96 3.52 66.7 -1.64 -0.56 19.9 84 8 3 3 2 1 1 0   10 1.29 1.31 69.5 -1.73 -0.65 19.7 86 7 3 3 2 2 0 0   11 3.12 3.91 70.4 -1.96 -0.53 21.9 86 7 4 6 5 2 0 0   12 1.22 2.16 74.2 -2.19 -0.63 26.8 87 8 5 4 3 1 0 0   13 1.19 2.22 86.5 -1.82 -0.47 25.0 89 9 6 7 5 1 0 0   14 1.67 1.86 86.9 -1.12 -0.32 21.4 85 8 6 6 4 2 0 0   15 1.22 2.52 95.5 -1.15 -0.32 21.0 84 8 9 5 6 2 1 0   16 1.71 1.95 96.6 -1.31 -0.45 18.8 84 10 5 4 4 2 1 0   17 1.29 2.31 100.8 -1.40 -0.37 23.3 86 10 8 5 9 2 0 0   18 1.71 1.91 114.6 -2.01 -0.60 23.4 82 10 7 5 4 3 0 0   19 1.38 2.59 116.3 -1.41 -0.34 20.0 88 10 6 8 9 3 0 0   20 2.85 3.42 119.1 -1.75 -0.44 21.8 87 10 4 9 3 3 0 0   21 1.22 2.12 122.1 -2.05 -0.48 28.7 88 11 10 8 9 1 0 0   22 2.81 3.41 134.8 -2.19 -0.51 23.1 83 9 5 10 4 4 0 0   23 1.35 1.45 149.5 -1.47 -0.40 19.6 83 12 7 7 5 4 2 0   24 1.40 1.46 167.4 -1.97 -0.52 22.7 82 12 9 8 5 5 1 0   25 1.32 1.32 181.4 -1.70 -0.51 19.5 83 14 6 8 3 5 1 0   26 1.38 1.48 199.4 -2.18 -0.62 22.5 81 14 8 9 2 6 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.