spacer
spacer

PDBsum entry 2fak

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 2fak calculated with MOLE 2.0 PDB id
2fak
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.59 1.59 41.7 -2.07 -0.69 22.2 85 2 5 4 2 0 1 0  
2 1.27 1.56 62.0 -0.80 -0.22 13.9 79 7 4 6 6 3 2 0  
3 1.36 1.57 130.7 -2.60 -0.47 29.2 78 19 13 10 5 4 1 0  
4 1.45 1.48 152.4 -1.93 -0.51 22.6 85 13 11 8 5 4 0 0  
5 1.36 1.59 150.9 -2.09 -0.40 24.7 82 16 11 14 7 7 1 0  
6 1.37 1.54 155.4 -2.01 -0.44 23.8 79 15 13 8 6 8 2 0  
7 1.56 1.73 155.2 -1.83 -0.39 22.8 84 14 11 13 9 7 1 0  
8 1.56 1.83 159.8 -2.30 -0.45 26.9 80 19 14 11 6 6 1 0  
9 1.35 1.96 174.4 -1.74 -0.37 20.1 83 14 8 15 12 9 1 0  SA1 0 K
10 1.33 2.00 177.1 -1.89 -0.44 21.5 83 19 9 16 13 6 1 0  SA1 0 K
11 1.33 2.12 178.0 -1.62 -0.49 17.4 88 14 11 16 11 5 0 0  SA1 0 K
12 1.31 1.99 178.7 -1.56 -0.53 16.6 87 13 12 14 11 5 0 0  SA1 0 K
13 1.33 1.98 182.8 -1.88 -0.47 21.0 83 20 9 16 13 6 1 0  SA1 0 K
14 1.31 2.12 181.6 -1.76 -0.40 20.7 81 16 11 14 10 9 0 0  SA1 0 K
15 1.37 1.66 189.0 -1.55 -0.30 20.5 78 20 11 12 9 9 2 0  
16 1.33 1.99 185.8 -1.37 -0.38 16.6 84 13 10 17 13 9 1 0  SA1 0 K
17 1.23 1.61 197.9 -1.62 -0.41 18.2 85 17 12 20 17 7 0 0  SA1 0 K
18 1.22 1.96 211.5 -1.45 -0.36 17.9 84 15 9 17 14 9 1 0  SA1 0 K
19 1.39 1.47 221.6 -2.44 -0.41 25.5 82 22 11 16 7 9 1 0  
20 1.22 1.61 230.3 -1.62 -0.45 18.9 86 18 9 19 14 9 1 0  SA1 0 K
21 1.33 1.47 225.3 -2.41 -0.51 24.2 86 22 14 17 6 5 0 0  
22 1.40 1.52 224.3 -2.62 -0.47 27.1 82 27 12 17 8 6 1 0  
23 1.40 1.63 228.8 -2.53 -0.42 26.9 80 24 14 15 5 9 0 0  
24 1.43 1.57 240.8 -2.17 -0.39 24.3 83 21 11 15 8 9 1 0  
25 1.44 4.50 243.5 -2.33 -0.44 25.6 83 26 12 16 9 6 1 0  
26 1.34 1.63 245.1 -2.29 -0.44 23.9 84 25 15 21 12 7 0 0  
27 1.38 1.55 244.5 -2.13 -0.48 22.7 87 21 14 16 7 5 0 0  
28 1.63 1.86 248.0 -2.20 -0.41 25.1 81 23 14 14 6 9 0 0  
29 1.40 1.53 261.2 -1.80 -0.30 20.1 80 23 10 19 11 11 2 0  
30 1.63 1.85 280.5 -1.61 -0.30 19.5 81 22 11 19 12 11 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer