PDBsum entry 2f7f

Tunnel analysis for: 2f7f calculated with

MOLE 2.0

PDB id

2f7f

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.52

1.66

18.1

-2.11

-0.35

16.8

77

3

2

1

0

1

1

0

GOL 801 A

2

1.81

2.08

20.6

-1.01

-0.15

10.1

74

2

2

1

2

2

2

0

GOL 801 A

3

1.84

2.07

22.9

-2.28

-0.36

19.4

79

4

3

2

1

1

2

0

GOL 801 A

4

1.21

1.36

15.9

-0.49

-0.23

8.8

82

1

1

1

2

1

0

0

5

1.21

2.52

17.0

-1.01

-0.19

15.4

88

2

0

2

1

2

0

0

NIO 601 A

6

1.21

1.93

15.8

-1.40

-0.15

17.1

76

3

1

2

2

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.