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PDBsum entry 2f5p

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Top Page protein dna_rna metals tunnels links
Tunnel analysis for: 2f5p calculated with MOLE 2.0 PDB id
2f5p
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.31 21.1 -1.27 -0.36 14.5 82 3 0 1 0 1 1 0  9 DC C,9 DT D,10 DC D,11 DT D,12 DA D
2 1.28 22.3 -1.45 -0.32 17.3 82 5 0 1 0 1 1 0  9 DT D,10 DC D,11 DT D
3 1.28 22.6 -1.31 -0.31 16.9 79 4 0 0 0 1 1 0  9 DT D,10 DC D,11 DT D,12 DA D
4 1.96 8.7 0.74 0.04 8.5 69 0 1 0 4 0 1 0  
5 1.34 5.2 -1.81 -0.69 21.6 77 2 1 0 0 0 0 0  
6 1.34 7.7 -0.95 0.01 24.2 73 2 1 0 2 1 0 0  
7 1.83 4.1 -2.26 -0.33 31.8 84 3 0 0 0 0 0 0  11 DT C
8 1.56 5.5 -1.59 -0.46 22.1 84 3 0 0 0 0 0 0  11 DT C,12 DG C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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