spacer
spacer

PDBsum entry 2f53

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2f53 calculated with MOLE 2.0 PDB id
2f53
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.61 1.65 21.6 -1.09 0.00 10.9 77 2 2 2 2 3 1 0  GOL 803 A
2 1.40 1.46 15.4 -0.06 -0.44 5.3 74 1 1 1 0 1 0 1  
3 1.52 1.53 15.8 -0.97 -0.51 9.9 84 1 1 4 1 1 1 0  
4 1.05 1.22 16.8 -2.42 -0.50 23.4 83 1 3 1 1 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer