PDBsum entry 2ex5 Go to PDB code:  Tunnel analysis for: 2ex5 calculated with MOLE 2.0 PDB id 2ex5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 1.21 45.0 -1.27 -0.67 13.6 89 4 2 4 2 0 0 0  DG 617 X DT 618 X DA 619 X DT 708 Y DA 709 Y 2 1.15 1.22 46.0 -1.90 -0.83 18.8 86 4 3 3 0 0 0 0  CA 803 B DG 617 X DT 618 X DA 619 X DG 620 X DC 626 X DT 704 Y DC 705 Y DC 707 Y 3 1.16 1.23 51.3 -1.33 -0.63 19.6 85 4 3 2 3 0 0 0  CA 803 B DG 617 X DT 618 X DA 619 X DG 620 X DC 621 X DT 704 Y DC 705 Y DC 707 Y 4 1.47 1.49 31.0 -1.88 -0.75 24.4 92 2 4 4 1 0 0 0  CA 801 A DA 603 X DT 604 X DA 605 X DA 606 X DC 607 X DC 718 Y DG 726 Y 5 1.43 1.44 32.6 -1.94 -0.76 24.7 92 2 4 4 1 0 0 0  CA 801 A DA 603 X DT 604 X DA 605 X DA 606 X DC 607 X DC 718 Y DC 719 Y DG 726 Y 6 1.31 1.31 34.0 -0.82 -0.43 23.8 92 0 3 2 3 0 0 0  CA 801 A DG 602 X DA 605 X DA 606 X DC 607 X DC 718 Y DT 721 Y DT 722 Y DT 724 Y 7 1.31 1.31 35.6 -1.00 -0.49 23.6 92 0 3 2 3 0 0 0  CA 801 A DG 602 X DA 605 X DA 606 X DC 607 X DC 718 Y DC 719 Y DT 721 Y DT 722 Y DT 724 Y Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.