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PDBsum entry 2ex3

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Top Page protein metals Protein-protein interface(s) pores links
Pore analysis for: 2ex3 calculated with MOLE 2.0 PDB id
2ex3
Pores calculated on whole structure Pores calculated excluding ligands

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52 pores, coloured by radius 54 pores, coloured by radius 54 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.79 1.80 27.4 -1.52 -0.58 18.6 81 3 6 2 3 0 1 0  
2 2.16 2.18 29.7 -1.00 0.07 17.0 82 2 2 1 5 2 0 0  
3 4.43 5.43 36.1 -3.06 -0.37 36.9 74 9 5 0 1 3 0 0  
4 2.02 2.40 47.7 -1.62 -0.16 23.5 74 7 6 2 4 3 3 0  
5 1.65 1.65 47.7 -2.56 -0.73 30.6 78 4 5 1 0 1 0 0  UNK 6 H UNK 45 H UNK 47 H
6 2.54 4.83 48.2 -1.78 -0.37 20.3 81 8 3 4 4 2 1 0  
7 1.52 1.52 50.6 -1.39 -0.37 19.7 78 8 5 4 3 3 0 0  UNK 10 D UNK 31 D UNK 32 D UNK 35 D UNK 36 D UNK
45 D UNK 46 D UNK 47 D
8 2.16 2.16 57.4 -1.42 -0.22 12.8 86 6 2 8 5 3 0 0  
9 2.16 2.16 62.8 -2.47 -0.60 21.9 79 9 5 7 1 3 1 0  
10 2.44 2.44 69.0 -1.55 -0.22 15.1 81 9 1 6 6 4 0 0  
11 4.07 5.81 71.5 -2.33 -0.26 33.1 76 14 8 0 4 4 0 0  
12 2.05 3.36 81.9 -0.97 -0.06 13.6 79 6 5 5 8 6 4 0  
13 2.03 2.42 90.0 -1.54 -0.37 15.0 77 9 6 6 4 5 4 0  
14 2.05 3.35 92.9 -1.52 -0.33 14.0 78 7 7 9 5 6 4 0  
15 2.06 2.44 95.7 -1.12 -0.12 15.6 79 8 5 6 9 5 4 0  
16 1.88 2.15 95.9 -1.52 -0.21 23.3 81 10 8 2 11 3 1 0  
17 2.38 2.68 111.2 -2.08 -0.36 30.5 75 20 6 0 5 5 0 0  
18 1.86 2.09 121.1 -1.43 -0.29 18.8 77 8 12 5 8 7 5 0  
19 1.82 2.22 128.8 -1.95 -0.57 22.0 80 19 8 5 4 3 1 0  
20 2.12 2.38 131.9 -1.98 -0.41 24.4 78 22 11 5 6 7 1 0  
21 1.50 1.48 138.1 -1.57 -0.52 18.5 81 15 11 9 6 5 0 0  UNK 10 D UNK 31 D UNK 32 D UNK 35 D UNK 36 D UNK
45 D UNK 46 D UNK 47 D
22 1.87 2.14 138.5 -1.65 -0.30 23.1 79 17 7 2 10 4 1 0  
23 1.56 1.55 147.6 -1.23 -0.35 17.5 81 14 10 9 11 5 1 0  UNK 10 D UNK 31 D UNK 32 D UNK 35 D UNK 36 D UNK
45 D UNK 46 D UNK 47 D
24 1.45 1.42 152.7 -1.38 -0.42 20.7 78 16 15 5 11 4 3 0  UNK 10 D UNK 31 D UNK 32 D UNK 35 D UNK 36 D UNK
45 D UNK 46 D UNK 47 D
25 1.57 4.14 37.8 -2.18 -0.48 27.0 81 4 4 3 1 1 1 0  
26 2.35 2.55 39.4 -2.10 -0.58 13.3 85 7 1 8 1 2 0 0  
27 1.90 2.52 43.5 -1.41 -0.19 20.1 76 6 6 2 4 2 3 0  
28 3.75 4.31 43.8 -3.07 -0.36 39.2 74 10 5 0 1 4 0 0  
29 1.97 2.28 49.4 -1.30 -0.10 21.7 72 7 5 2 4 3 3 0  
30 2.07 2.94 54.0 -1.14 -0.21 14.4 78 4 4 5 4 3 4 0  
31 1.45 1.85 54.9 -1.38 -0.32 21.4 79 8 8 3 2 2 0 0  
32 2.31 2.59 60.9 -2.43 -0.53 22.1 77 10 6 5 1 4 1 0  
33 1.85 2.15 66.8 -1.54 -0.38 20.9 85 5 7 4 3 1 3 0  
34 1.57 4.13 67.6 -1.56 -0.16 21.9 73 8 4 2 5 2 3 0  
35 1.56 1.56 80.6 -1.90 -0.36 26.6 79 10 9 2 4 3 0 0  
36 2.01 2.28 87.4 -1.62 -0.35 15.2 76 8 5 7 4 7 4 0  
37 3.15 5.13 119.5 -1.90 -0.16 30.1 79 15 11 0 6 3 1 0  
38 1.79 3.47 122.5 -1.74 -0.36 22.5 79 10 11 4 9 5 2 0  
39 2.14 2.42 130.1 -2.21 -0.43 26.6 79 20 12 5 6 5 1 0  
40 1.92 2.14 139.8 -1.43 -0.34 16.8 81 16 9 9 10 6 2 0  
41 2.59 2.92 138.9 -2.43 -0.34 34.7 77 21 11 0 6 5 0 0  
42 2.16 2.41 143.9 -2.10 -0.49 24.9 80 17 12 5 5 3 1 0  
43 1.89 2.20 144.5 -2.25 -0.38 29.1 78 20 17 4 7 7 2 0  
44 2.03 2.31 147.0 -2.29 -0.36 29.5 76 21 16 4 7 7 2 0  
45 1.77 2.13 162.7 -1.93 -0.45 19.7 84 13 12 8 6 3 3 0  
46 1.74 2.08 164.5 -2.21 -0.39 28.5 77 18 16 4 6 5 2 0  
47 1.57 4.14 163.0 -1.91 -0.35 24.3 79 17 13 4 6 5 3 0  
48 2.08 2.26 166.7 -1.55 -0.29 18.4 81 19 12 13 10 7 3 0  
49 1.91 2.21 186.8 -1.39 -0.18 19.4 79 19 14 8 15 9 3 0  
50 1.89 2.72 197.0 -1.57 -0.33 18.7 81 13 16 7 10 7 6 0  
51 1.79 3.47 203.0 -2.03 -0.29 26.4 75 26 16 7 10 11 5 0  
52 1.57 3.89 204.8 -1.52 -0.35 21.3 82 23 15 7 12 5 2 0  
53 1.57 3.85 221.7 -1.60 -0.29 23.8 80 24 19 6 13 7 3 0  
54 1.59 3.42 243.3 -1.89 -0.39 19.5 77 19 16 14 7 12 6 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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