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Ligand clusters for UniProt code P00396

Ligand clusters for P00396: Cytochrome c oxidase subunit 1 OS=Bos taurus GN=MT-CO1 PE=1 SV=1

Top 6 (of 17) ligand clusters
Cluster 1.
7 ligand types
62 ligands
Cluster 2.
8 ligand types
115 ligands
Cluster 3.
4 ligand types
55 ligands
Cluster 4.
5 ligand types
51 ligands
Cluster 5.
1 ligand type
24 ligands
Cluster 6.
1 ligand type
24 ligands
Representative protein: 1occA  
 

Structures

PDB   Schematic diagram
1occA    
2ybbL    
3x2qA    
3ablA    
3asnA    
 more ...

 

 Cluster 1 contains 7 ligand types

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Ligand Description


 
1. Ligand: HEA × 12
Heme-A
PDB codes: 1occ(A), 1ocr(A), 1ocz(A), 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A).

_Cu
 
2. Metal: _CU × 31
PDB codes: 1occ(A), 1oco(A), 1ocr(A), 1ocz(A), 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A), 2occ(A), 2y69(A), 2ybb(L), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5iy5(A).


 
3. Ligand: HEA × 13
Heme-A
PDB codes: 2y69(A), 2ybb(L), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag2(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A).


 
4. Ligand: HEA-CMO × 2
HEA=Heme-A, CMO=Carbon monoxide.
PDB codes: 1oco(A), 3ag1(A).


 
5. Ligand: HEA-PER × 2
HEA=Heme-A, PER=Peroxide ion.
PDB codes: 2occ(A), 5iy5(A).


 
6. Ligand: HEA-CYN × 1
HEA=Heme-A, CYN=Cyanide ion.
PDB code: 3ag4(A).


 
7. Ligand: HEA-_NO × 1
HEA=Heme-A, NO=Nitric oxide.
PDB code: 3ag3(A).

 

 Cluster 2 contains 8 ligand types

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Ligand Description


 
1. Ligand: CHD × 18
Cholic acid
PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A),


 
2. Ligand: PEK × 9
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A).


 
3. Ligand: PGV × 8
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate
PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A).


 
4. Ligand: CDL × 9
Cardiolipin
PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A).


 
5. Ligand: CHD × 32
Cholic acid
PDB codes: 2y69(A), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5iy5(A),


 
6. Ligand: CDL × 15
Cardiolipin
PDB codes: 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5iy5(A).


 
7. Ligand: PEK × 14
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A).


 
8. Ligand: PGV × 10
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate
PDB codes: 2zxw(A), 3abl(A), 3abm(A), 3ag1(A), 3asn(A), 3aso(A), 3wg7(A), 5b1a(A), 5b1b(A), 5iy5(A).

 

 Cluster 3 contains 4 ligand types

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Ligand Description


 
1. Ligand: HEA × 14
Heme-A
PDB codes: 1occ(A), 1oco(A), 1ocr(A), 1ocz(A), 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A), 2occ(A).


 
2. Ligand: TGL × 9
Tristearoylglycerol
PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A).


 
3. Ligand: HEA × 17
Heme-A
PDB codes: 2y69(A), 2ybb(L), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5iy5(A).


 
4. Ligand: TGL × 15
Tristearoylglycerol
PDB codes: 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5iy5(A).

 

 Cluster 4 contains 5 ligand types

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Ligand Description


 
1. Ligand: PEK × 9
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A).


 
2. Ligand: PGV × 9
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate
PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A).


 
3. Ligand: PEK × 16
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl] oxy}-1-[(Stearoyloxy)methyl]ethyl (5e,8e,11e, 14e)-
Icosa-5,8,11,14-Tetraenoate
PDB codes: 2y69(A), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5iy5(A).


 
4. Ligand: PGV × 16
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy} (hydroxy)phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl] ethyl (11e)-Octadec-11-Enoate
PDB codes: 2y69(A), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5iy5(A).


 
5. Ligand: DCW × 1
Dicyclohexylurea
PDB code: 2dys(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: TGL × 24
Tristearoylglycerol
PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5iy5(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: TGL × 24
Tristearoylglycerol
PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5iy5(A).

 

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