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PDBsum entry 2efm

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 2efm calculated with MOLE 2.0 PDB id
2efm
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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2 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.60 1.78 20.0 -0.40 -0.27 3.6 78 0 1 4 2 1 0 1  4MC 216 A EDO 225 A EDO 227 A 4MC 216 C
2 1.52 1.69 20.5 -0.36 -0.29 4.4 73 0 1 4 2 2 0 1  4MC 216 A EDO 225 A EDO 227 A 4MC 216 C
3 1.56 1.74 24.4 -0.50 -0.60 4.3 74 0 2 3 2 1 0 1  4MC 216 A EDO 224 A EDO 227 A 4MC 216 C SO4 219 C
4 1.50 1.67 24.4 -0.54 -0.58 5.0 75 0 2 4 2 1 0 1  4MC 216 A EDO 224 A EDO 227 A 4MC 216 C SO4 219 C
5 1.50 1.67 25.7 -0.44 -0.01 4.1 71 0 1 4 1 2 0 1  4MC 216 A EDO 227 A 4MC 216 C EDO 238 C
6 1.65 1.65 16.5 0.05 -0.33 8.2 94 0 1 4 2 0 1 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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