 |
PDBsum entry 2ec0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2ec0 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2ec0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
7 pores,
coloured by radius |
|
6 pores,
coloured by radius
|
6 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.47 |
2.47 |
26.4 |
-1.70 |
-0.78 |
20.7 |
84 |
|
3 |
2 |
0 |
0 |
0 |
0 |
0 |
|
A 903 E G 907 E C 908 E C 909 E DG 915 F DG 916 F
DG 917 F DC 918 F
|
 |
|
2 |
 |
2.16 |
2.17 |
36.5 |
-2.53 |
-0.55 |
32.0 |
81 |
7 |
2 |
1 |
0 |
1 |
0 |
0 |
PPV 930 A A 903 B DG 917 C DC 918 C DC 919 C DC
920 C DA 921 C
|
|
3 |
 |
1.36 |
2.81 |
39.1 |
-0.69 |
0.10 |
24.3 |
89 |
7 |
3 |
1 |
6 |
1 |
0 |
0 |
PPV 2930 D
|
|
4 |
 |
2.07 |
2.12 |
44.4 |
-2.57 |
-0.68 |
31.6 |
79 |
8 |
4 |
0 |
0 |
0 |
0 |
0 |
PPV 2930 D A 903 E DG 915 F DG 916 F DG 917 F DC
918 F DC 919 F DC 920 F DA 921 F
|
|
5 |
 |
2.09 |
2.39 |
49.1 |
-2.73 |
-0.72 |
34.1 |
82 |
6 |
5 |
0 |
0 |
0 |
0 |
0 |
PPV 2930 D A 903 E G 907 E C 908 E C 909 E DG 915
F DG 916 F DG 917 F DC 918 F DC 919 F DC 920 F DA
921 F
|
 |
6 |
 |
1.26 |
2.75 |
131.0 |
-1.95 |
-0.58 |
22.1 |
80 |
5 |
8 |
2 |
5 |
2 |
2 |
0 |
A 903 B DG 915 C DG 916 C DG 917 C DC 918 C G 907
E C 908 E C 909 E DG 915 F
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program