spacer
spacer

PDBsum entry 2e2h

Go to PDB code: 
Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2e2h calculated with MOLE 2.0 PDB id
2e2h
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
14 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.18 1.52 45.7 -2.23 -0.68 19.3 83 2 5 5 2 1 2 0  
2 1.23 2.68 66.4 0.18 0.09 10.1 78 5 5 3 12 0 5 3  
3 1.24 1.83 69.0 -0.56 -0.02 14.3 85 6 2 3 9 0 5 0  
4 1.28 1.33 78.5 -0.33 0.00 14.9 81 7 6 4 11 0 6 3  
5 2.45 2.68 97.5 -2.08 -0.44 25.1 76 10 10 8 3 5 3 0  
6 2.89 2.85 152.0 -1.86 -0.57 25.1 85 15 13 11 6 1 4 0  DC 1 N A 1 R G 4 R A 5 R G 6 R DG 17 T DC 18 T DT
19 T DC 21 T DC 23 T DT 24 T DC 25 T
7 1.55 1.58 163.7 -1.61 -0.53 21.4 84 14 15 11 9 2 4 0  DC 1 N DG 10 N DA 9 T DA 10 T
8 2.87 2.89 175.1 -2.22 -0.56 26.4 79 16 16 10 6 4 5 0  DC 1 N A 1 R G 4 R A 5 R G 6 R DG 17 T DC 18 T DT
19 T DC 21 T DC 23 T DT 24 T DC 25 T
9 1.19 1.45 182.8 -1.54 -0.47 19.2 84 15 13 15 11 3 3 0  DC 1 N DG 10 N DC 1 T DT 2 T DA 9 T DA 10 T
10 1.46 1.59 191.4 -1.96 -0.53 22.9 80 15 18 11 9 5 5 0  DC 1 N DG 10 N DA 9 T DA 10 T
11 1.33 1.33 195.4 -0.91 -0.24 19.3 81 18 15 9 17 1 8 3  DC 1 N A 1 R G 4 R A 5 R G 6 R DG 17 T DC 18 T DT
19 T DC 21 T DC 23 T DT 24 T DC 25 T
12 1.38 1.73 193.4 -2.04 -0.59 23.4 82 16 15 9 7 1 6 0  DC 1 N DG 10 N A 1 R G 4 R A 5 R G 6 R DA 9 T DA
10 T DG 17 T DC 18 T DT 19 T DC 21 T DC 23 T DT
24 T DC 25 T
13 1.19 1.21 200.0 -1.20 -0.25 20.8 80 14 12 9 14 6 4 0  DC 1 N DG 14 T DG 17 T
14 1.42 1.54 211.4 -1.19 -0.38 20.6 81 17 15 9 13 3 4 0  DC 1 N A 1 R G 4 R A 5 R G 6 R DG 17 T DC 18 T DT
19 T DC 21 T DC 23 T DT 24 T DC 25 T DG 26 T DA
27 T DT 28 T
15 1.19 1.21 208.6 -0.80 -0.26 15.1 84 15 8 9 16 3 3 0  DC 1 N DG 10 N DA 9 T DA 10 T DG 14 T DG 17 T
16 1.19 2.94 214.9 -0.55 -0.10 15.4 80 18 13 8 26 3 10 3  DC 1 N A 1 R G 4 R A 5 R G 6 R DT 8 T DA 9 T DA
10 T DG 17 T DC 18 T DT 19 T DC 21 T DC 23 T DT
24 T DC 25 T
17 1.19 2.94 230.9 -0.76 -0.20 16.4 80 17 13 8 22 5 6 0  DC 1 N A 1 R G 4 R A 5 R G 6 R DT 8 T DA 9 T DA
10 T DG 17 T DC 18 T DT 19 T DC 21 T DC 23 T DT
24 T DC 25 T DG 26 T DA 27 T DT 28 T
18 1.34 1.33 258.6 -1.06 -0.25 16.9 80 20 14 11 18 2 9 3  DC 1 N DG 10 N A 1 R G 4 R A 5 R G 6 R DC 1 T DT
2 T DA 9 T DA 10 T DG 17 T DC 18 T DT 19 T DC 21
T DC 23 T DT 24 T DC 25 T
19 1.38 2.30 274.6 -1.30 -0.36 17.7 81 19 14 11 15 4 5 0  DC 1 N DG 10 N A 1 R G 4 R A 5 R G 6 R DC 1 T DT
2 T DA 9 T DA 10 T DG 17 T DC 18 T DT 19 T DC 21
T DC 23 T DT 24 T DC 25 T DG 26 T DA 27 T DT 28 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer