 |
PDBsum entry 2dzn
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2dzn calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2dzn
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
11 tunnels,
coloured by tunnel radius |
|
11 tunnels,
coloured by
tunnel radius
|
11 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.02 |
1.39 |
17.8 |
0.69 |
0.12 |
7.1 |
77 |
|
0 |
1 |
2 |
4 |
3 |
0 |
0 |
|
|
 |
|
2 |
 |
1.02 |
1.39 |
17.8 |
0.69 |
0.12 |
7.1 |
77 |
0 |
1 |
2 |
4 |
3 |
0 |
0 |
|
|
3 |
 |
1.03 |
1.34 |
24.3 |
0.06 |
-0.02 |
9.8 |
70 |
1 |
1 |
2 |
5 |
4 |
1 |
0 |
|
|
4 |
 |
1.03 |
1.34 |
24.3 |
0.06 |
-0.02 |
9.8 |
70 |
1 |
1 |
2 |
5 |
4 |
1 |
0 |
|
|
5 |
 |
1.40 |
1.55 |
15.7 |
-2.16 |
-0.21 |
20.1 |
87 |
2 |
2 |
4 |
1 |
1 |
0 |
0 |
|
|
6 |
 |
1.36 |
1.57 |
18.8 |
-1.44 |
-0.49 |
22.2 |
88 |
2 |
2 |
1 |
2 |
1 |
0 |
0 |
|
|
7 |
 |
1.37 |
1.48 |
26.8 |
-0.16 |
-0.06 |
15.2 |
82 |
2 |
2 |
2 |
4 |
2 |
0 |
0 |
|
|
8 |
 |
1.31 |
1.51 |
16.7 |
0.45 |
-0.13 |
7.5 |
99 |
1 |
1 |
4 |
4 |
0 |
0 |
0 |
|
|
9 |
 |
1.24 |
1.46 |
17.9 |
0.29 |
-0.14 |
7.4 |
99 |
1 |
1 |
4 |
4 |
0 |
0 |
0 |
|
|
10 |
 |
1.29 |
1.28 |
16.0 |
0.19 |
-0.23 |
5.6 |
99 |
1 |
1 |
4 |
2 |
0 |
0 |
0 |
|
 |
11 |
 |
1.26 |
1.53 |
20.2 |
-0.10 |
0.44 |
14.2 |
71 |
1 |
1 |
0 |
3 |
2 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program