PDBsum entry 2dw0

Pore analysis for: 2dw0 calculated with

MOLE 2.0

PDB id

2dw0

Pores calculated on whole structure

Pores calculated excluding ligands

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13 pores, coloured by radius

14 pores, coloured by radius

14 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

3.11

4.47

25.3

-2.84

-0.46

34.6

78

6

3

2

1

0

1

0

2

3.46

4.55

26.5

-1.61

-0.19

22.6

71

2

3

1

4

2

2

0

3

3.01

3.03

28.1

-2.44

-0.67

25.3

80

5

4

3

0

1

0

0

4

2.41

2.41

28.5

-1.44

-0.40

17.5

78

3

3

3

2

2

1

0

5

3.32

3.44

28.9

-2.18

-0.31

24.2

78

2

3

2

1

1

2

0

6

3.06

4.75

32.3

-2.47

-0.34

27.2

73

7

3

3

1

2

2

1

7

3.23

4.54

32.5

-2.38

-0.48

33.7

76

6

5

2

1

0

1

1

8

2.20

2.34

33.2

-0.71

0.04

8.5

76

1

2

2

1

2

0

2

NAG 1 D NAG 2 D MAN 4 D

9

1.15

1.21

33.3

-1.68

-0.24

14.9

75

2

1

3

1

2

2

1

10

3.43

4.72

42.0

-2.30

-0.25

27.2

73

6

3

3

0

2

2

1

11

2.19

2.32

42.0

-2.14

-0.36

24.1

82

4

4

4

1

1

0

2

NAG 1 D

12

1.72

2.06

51.5

-1.98

-0.33

25.4

81

7

3

3

4

1

2

0

GM6 901 A

13

1.71

3.02

52.6

-1.49

-0.33

21.9

82

5

5

3

4

2

2

0

GM6 901 A

14

1.72

2.14

60.5

-1.78

-0.35

26.3

79

6

5

2

5

1

3

1

GM6 901 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.