PDBsum entry 2duc Go to PDB code:  Tunnel analysis for: 2duc calculated with MOLE 2.0 PDB id 2duc Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.96 2.13 27.4 -1.77 -0.60 21.6 88 4 0 1 2 0 0 0   2 1.94 2.12 28.8 -1.47 -0.50 20.5 89 4 1 1 2 0 0 0   3 1.99 1.99 30.7 -2.19 -0.74 27.2 89 5 4 3 2 0 0 0   4 1.96 2.14 31.0 -1.08 -0.68 12.6 87 3 0 3 2 0 0 0   5 1.33 1.36 17.4 -0.11 -0.11 6.7 80 1 1 2 3 1 2 0   6 1.21 1.95 23.5 -0.66 -0.12 7.7 82 2 1 4 2 1 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.