PDBsum entry 2dqb Go to PDB code:  Pore analysis for: 2dqb calculated with MOLE 2.0 PDB id 2dqb Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 4.99 5.27 29.7 -1.72 -0.59 21.8 76 4 6 0 0 1 1 0   2 4.08 4.84 40.2 -2.64 -0.52 26.1 86 6 0 6 0 2 3 0   3 4.31 4.31 50.3 -2.43 -0.67 28.2 82 6 5 3 0 2 1 0   4 4.32 4.31 52.8 -2.84 -0.66 32.8 83 10 6 3 0 1 1 0   5 4.31 4.31 59.7 -2.50 -0.58 28.4 80 8 7 3 0 2 2 0   6 4.08 4.59 60.1 -2.56 -0.61 29.1 80 8 5 3 0 2 3 0   7 4.08 4.60 60.8 -3.02 -0.60 34.8 81 11 6 3 0 1 3 0   8 4.32 4.32 61.1 -2.77 -0.64 32.2 83 10 7 3 1 1 2 0   9 4.08 4.74 62.7 -2.97 -0.59 34.2 82 11 7 3 1 1 3 0   10 4.08 4.52 62.6 -2.81 -0.52 31.4 79 9 7 3 0 2 3 0   11 1.77 1.95 75.4 -2.49 -0.46 31.1 82 15 6 3 2 3 1 0   12 4.56 4.62 74.7 -2.91 -0.69 36.2 79 14 11 0 0 1 1 0   13 4.99 5.12 77.2 -3.09 -0.61 38.2 79 15 13 0 0 1 1 0   14 1.51 2.03 80.3 -2.06 -0.32 30.8 82 11 6 1 7 1 0 0   15 1.77 1.96 81.0 -2.64 -0.41 31.4 80 15 6 3 2 5 2 0   16 4.56 4.62 83.0 -2.82 -0.68 35.4 78 14 12 0 1 1 2 0   17 4.72 5.23 85.5 -3.00 -0.61 37.2 78 15 14 0 1 1 2 0   18 1.77 1.92 88.7 -2.71 -0.44 33.2 81 17 6 3 2 3 2 0   19 1.76 1.92 98.8 -2.72 -0.42 31.6 82 17 7 5 2 3 4 0   20 1.80 1.90 102.4 -2.11 -0.32 28.0 82 18 7 2 4 4 1 0   21 1.80 1.95 102.4 -2.83 -0.52 37.4 80 21 13 0 3 2 1 0   22 1.77 1.96 104.3 -2.82 -0.47 36.6 79 21 13 0 2 3 1 0   23 1.42 1.63 105.6 -2.15 -0.44 25.6 79 13 6 4 5 4 4 0   24 1.42 1.62 105.9 -1.59 -0.42 21.7 77 12 11 1 6 3 4 0  MSE 304 E 25 1.47 1.66 109.3 -2.22 -0.37 25.6 78 14 6 4 5 5 5 0  MSE 304 E 26 1.76 1.91 116.1 -2.84 -0.43 36.0 79 22 14 0 2 3 2 0   27 1.73 1.92 126.5 -2.92 -0.49 36.5 81 24 14 2 3 2 3 0   28 1.50 1.68 130.0 -2.37 -0.43 30.0 77 18 13 1 5 4 4 0   29 1.07 1.12 141.1 -2.29 -0.33 32.2 80 25 13 2 7 4 1 0   30 1.57 1.74 141.2 -1.89 -0.30 26.2 78 16 9 1 9 6 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.