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PDBsum entry 2dpx

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2dpx calculated with MOLE 2.0 PDB id
2dpx
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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13 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.48 11.3 -0.85 -0.24 18.6 87 3 1 2 3 0 0 0  500 GDP A,500 GDP B
2 1.88 17.3 -0.41 -0.25 13.5 89 4 2 2 4 0 0 0  500 GDP A
3 1.29 16.2 -0.25 -0.27 6.7 85 1 1 1 6 0 1 1  
4 1.29 16.7 0.07 -0.21 6.8 84 1 1 1 5 0 1 1  
5 1.63 4.9 0.91 0.39 10.7 70 1 0 0 2 1 0 1  
6 1.74 7.0 0.25 0.22 7.1 78 1 0 1 2 2 0 0  
7 1.73 9.9 -0.62 0.12 15.0 80 3 0 1 3 2 0 0  
8 2.11 7.6 0.64 0.18 10.9 90 2 0 0 2 0 0 0  
9 1.41 9.3 0.51 0.66 5.0 57 1 0 0 2 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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