PDBsum entry 2dpj Go to PDB code:  Tunnel analysis for: 2dpj calculated with MOLE 2.0 PDB id 2dpj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 1.37 20.0 -1.65 -0.61 18.2 78 3 1 1 0 1 0 0  DT 839 T EDA 840 T DG 841 T 2 1.36 1.36 23.9 -1.01 -0.54 18.6 76 2 1 1 2 0 0 0  TTP 875 A DOC 873 P DT 839 T EDA 840 T DG 841 T 3 1.36 1.36 29.3 -2.24 -0.51 24.5 82 2 1 1 0 1 0 0  DG 869 P DA 870 P DC 871 P DC 872 P DT 839 T EDA 840 T DG 841 T 4 1.37 1.37 29.7 -2.33 -0.75 27.9 83 4 2 1 0 0 0 0  DT 839 T EDA 840 T DG 841 T 5 1.38 1.37 31.2 -0.93 -0.25 18.5 82 2 1 4 2 0 0 2  DG 841 T DG 843 T DT 844 T DC 845 T DC 846 T 6 1.36 1.36 41.5 -1.94 -0.76 22.9 85 5 2 1 0 0 0 0  DG 868 P DG 869 P DT 839 T EDA 840 T DG 841 T 7 1.37 1.37 46.4 -1.55 -0.29 18.7 76 5 1 1 2 2 0 1  DA 870 P DC 871 P DC 872 P DT 839 T EDA 840 T DG 841 T 8 1.37 1.37 62.1 -1.61 -0.51 21.6 81 6 3 2 1 2 0 0  DT 839 T EDA 840 T DG 841 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.