PDBsum entry 2dly Go to PDB code:  Tunnel analysis for: 2dly calculated with MOLE 2.0 PDB id 2dly Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.21 2.71 15.1 -0.47 -0.31 10.0 81 1 1 2 2 1 0 0   2 1.15 3.35 17.0 -0.13 -0.01 13.9 81 1 1 1 4 1 0 0   3 1.22 2.94 17.8 -0.34 -0.29 9.1 87 0 1 3 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.