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PDBsum entry 2dgl

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Top Page protein ligands metals Protein-protein interface(s) links
Lyase PDB id
2dgl
Jmol
Contents
Protein chains
(+ 0 more) 450 a.a.
Ligands
PLP ×6
ACY ×6
Metals
_BR ×24
Waters ×134
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PROCHECK summary for 2dgl

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]         2033       87.1%*  
Additional allowed regions [a,b,l,p]        296       12.7%          
Generously allowed regions [~a,~b,~l,~p]      6        0.3%          
Disallowed regions         [XX]               0        0.0%          
                                           ----      ------
Non-glycine and non-proline residues       2335      100.0%

End-residues (excl. Gly and Pro)              9

Glycine residues                            210
Proline residues                            150
                                           ----
Total number of residues                   2704


Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].


2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -0.29      
     Chi1-chi2 distribution          -0.15      
     Chi1 only                       -0.02      
     Chi3 & chi4                      0.53      
     Omega                            0.59      
                                                   0.12      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths          0.64      
     Main-chain bond angles           0.45      
                                                   0.53      
                                                  =====

     OVERALL AVERAGE                               0.29      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.