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PDBsum entry 2dgk

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Top Page protein ligands Protein-protein interface(s) links
Ligand/metal interactions PDB id
2dgk
6 instances of ligand highlighted
PLP
Ligands
SO4 ×6
SO4 4770(A)
PLP ×6
PLP 1500(A)
EDO ×8
EDO 2193(A)
EDO 2191(B)
EDO 2194(B)
EDO 2195(C)
  
Ligand PLP - Pyridoxal-5'-Phosphate [Vitamin b6 phosphate]
Formula: C8H10NO6P
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
PLP 1500(A) 16 16 1 1 Complete Chiral checks - OK
Advanced Analysis
Residue Name Mismatches Count
PLP 1500(A) O3P: O1P|O1P: O2P|O2P: O3P 3
Additional Information

Jmol
Ligand matches this enzyme's cofactor pyridoxal with similarity 93.75%
 

LIGPLOT of interactions involving ligand


Jmol


 

PLP 1500(A)


also representing 5 other equivalent ligands:
PLP 1501(B)
PLP 1502(C)
PLP 1503(D)
PLP 1504(E)
PLP 1505(F)
  
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