spacer
spacer

PDBsum entry 2dg3

Go to PDB code: 
Top Page protein ligands clefts links
Cleft analysis for: 2dg3 PDB id
2dg3
View options
Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 1363.92 2.28 60.30 4 11.06 1 9.35 1 4 5 1 7 7 1 0 RAP 501[A] (36 atoms)
2 598.64 0.00 59.40 5 4.24 4 7.99 2 4 4 3 3 1 0 0  
3 352.69 0.00 52.04 9 2.80 6 7.75 3 2 0 0 3 1 2 0  
4 301.22 0.00 52.96 8 5.26 2 5.57 4 1 2 1 2 0 3 0  
5 150.19 0.00 55.24 7 4.52 3 4.95 5 1 2 2 0 1 0 0  
6 123.61 0.00 63.81 2 3.31 5 0.00 6 0 1 4 0 1 3 0  
7 78.47 0.00 62.50 3 1.21 9 0.00 7 0 0 3 1 0 1 0  
8 68.34 0.00 67.41 1 2.23 8 0.00 8 1 0 1 2 0 5 0  
9 58.64 0.00 58.80 6 2.78 7 0.00 9 2 0 1 0 0 0 0  
10 59.91 0.00 50.49 10 0.98 10 0.00 10 1 1 2 0 0 0 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
spacer
spacer