PDBsum entry 2d7d Go to PDB code:  Pore analysis for: 2d7d calculated with MOLE 2.0 PDB id 2d7d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.31 4.46 28.5 -1.81 -0.27 25.7 80 4 4 3 2 1 0 0  ADP 662 A 2 2.27 2.30 35.1 0.33 0.09 4.4 89 0 2 4 5 3 0 0   3 1.83 2.08 41.3 -1.45 -0.23 25.3 80 8 5 2 3 2 2 0  ADP 662 A 4 2.07 2.14 41.9 -2.36 -0.47 29.3 85 4 4 4 3 1 0 0  ADP 662 A 5 1.45 1.45 48.3 -0.50 -0.11 11.4 81 4 3 3 3 2 2 0  DT 1 D DT 2 D 6 1.93 2.14 54.3 -1.97 -0.50 26.7 86 5 6 4 5 0 0 0   7 1.30 1.29 69.9 -1.40 -0.14 16.8 74 3 5 4 4 8 1 0  DT 1 D DT 2 D DT 3 D 8 1.32 1.32 99.3 -1.12 -0.28 12.4 77 4 4 5 3 7 3 0  DT 1 D DT 2 D DT 3 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.