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PDBsum entry 2d69

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protein ligands Protein-protein interface(s) links
Lyase PDB id
2d69
Jmol PyMol
Contents
Protein chains
424 a.a.
Ligands
SO4 ×19
Waters ×750
PDB id:
2d69
Name: Lyase
Title: Crystal structure of the complex of sulfate ion and octameri ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) f pyrococcus horikoshii ot3 (form-2 crystal)
Structure: Ribulose bisphosphate carboxylase. Chain: a, b, d, e. Synonym: rubisco, ribulose-1,5-bisphosphate carboxylase/oxy engineered: yes
Source: Pyrococcus horikoshii. Organism_taxid: 70601. Strain: ot3. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Biol. unit: Dimer (from PDB file)
Resolution:
1.90Å     R-factor:   0.181     R-free:   0.209
Authors: E.Mizohata,C.Mishima,R.Akasaka,H.Uda,T.Terada,M.Shirouzu,S.Y Riken Structural Genomics/proteomics Initiative (Rsgi)
Key ref: E.Mizohata et al. Crystal structure of the complex of sulfate ion and octameric ribulose-1,5-Bisphosphate carboxylase/oxygenase (rubisco) from pyrococcus horikoshii ot3 (form-2 crystal). To be published, .
Date:
10-Nov-05     Release date:   10-May-06    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
O58677  (RBL_PYRHO) -  Ribulose bisphosphate carboxylase
Seq:
Struc:
430 a.a.
424 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.4.1.1.39  - Ribulose-bisphosphate carboxylase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: 2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O
2 × 3-phospho-D-glycerate
+ 2 × H(+)
= D-ribulose 1,5-bisphosphate
+ CO(2)
+ H(2)O
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Biological process     oxidation-reduction process   2 terms 
  Biochemical function     oxidoreductase activity     5 terms  

 

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