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PDBsum entry 2d3b
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Tunnel analysis for: 2d3b calculated with  MOLE 2.0
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PDB id
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2d3b
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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16 tunnels,
coloured by tunnel radius |
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21 tunnels,
coloured by
tunnel radius
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21 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.06 |
1.04 |
31.6 |
-1.23 |
-0.43 |
18.7 |
89 |
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8 |
1 |
1 |
3 |
0 |
0 |
0 |
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MSL 5007 C
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2 |
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1.31 |
1.50 |
40.1 |
-2.03 |
-0.34 |
25.7 |
81 |
9 |
5 |
4 |
3 |
3 |
1 |
0 |
MSL 5007 C MN 1051 F MN 1053 F ANP 6006 F
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3 |
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1.37 |
1.58 |
42.6 |
-1.98 |
-0.32 |
24.5 |
79 |
9 |
5 |
5 |
3 |
4 |
1 |
0 |
MN 1011 B MN 1013 B ANP 6002 B MSL 5002 C
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4 |
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1.36 |
1.57 |
42.2 |
-2.12 |
-0.36 |
26.6 |
78 |
9 |
5 |
4 |
3 |
4 |
1 |
0 |
MSL 5010 C MN 1071 H MN 1073 H ANP 6008 H
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5 |
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1.33 |
1.53 |
42.5 |
-2.06 |
-0.36 |
26.0 |
78 |
9 |
5 |
4 |
3 |
4 |
1 |
0 |
MSL 5009 C MN 1091 J MN 1093 J ANP 6010 J
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6 |
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1.07 |
1.08 |
31.9 |
-1.33 |
-0.42 |
19.9 |
89 |
8 |
1 |
1 |
3 |
0 |
0 |
0 |
MSL 5005 C
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7 |
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1.32 |
1.51 |
39.4 |
-2.17 |
-0.34 |
27.6 |
81 |
9 |
5 |
4 |
3 |
3 |
1 |
0 |
MSL 5005 C MN 1041 E MN 1043 E ANP 6005 E
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8 |
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1.29 |
1.45 |
24.6 |
-2.85 |
-0.30 |
31.0 |
75 |
5 |
4 |
3 |
0 |
3 |
1 |
0 |
MN 1021 C MN 1023 C MSL 5003 C ANP 6003 C
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9 |
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1.30 |
1.49 |
40.3 |
-2.09 |
-0.37 |
26.8 |
81 |
9 |
5 |
5 |
3 |
3 |
1 |
0 |
MN 1021 C MN 1023 C MSL 5003 C ANP 6003 C
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10 |
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1.30 |
2.75 |
24.9 |
-2.87 |
-0.33 |
30.1 |
75 |
5 |
4 |
3 |
0 |
3 |
1 |
0 |
MSL 5004 C MN 1031 D MN 1033 D ANP 6004 D
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11 |
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1.35 |
1.52 |
43.1 |
-2.17 |
-0.36 |
27.0 |
78 |
9 |
5 |
4 |
3 |
4 |
1 |
0 |
MSL 5008 C MN 1081 I MN 1083 I ANP 6009 I
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12 |
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1.16 |
1.23 |
25.8 |
-1.34 |
-0.26 |
18.9 |
85 |
2 |
3 |
2 |
2 |
1 |
0 |
0 |
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13 |
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1.17 |
1.24 |
26.6 |
-1.36 |
-0.26 |
19.5 |
85 |
2 |
3 |
2 |
2 |
1 |
0 |
0 |
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14 |
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1.17 |
1.29 |
24.9 |
-1.31 |
-0.34 |
18.4 |
85 |
2 |
3 |
2 |
3 |
1 |
0 |
0 |
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15 |
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1.18 |
1.26 |
20.6 |
-0.94 |
-0.10 |
14.7 |
86 |
2 |
2 |
2 |
2 |
1 |
0 |
0 |
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16 |
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1.15 |
1.22 |
26.2 |
-1.31 |
-0.28 |
19.1 |
85 |
2 |
3 |
2 |
2 |
1 |
0 |
0 |
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17 |
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1.16 |
1.24 |
19.7 |
-0.95 |
-0.08 |
14.4 |
86 |
2 |
2 |
2 |
2 |
1 |
0 |
0 |
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18 |
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1.17 |
1.24 |
26.0 |
-1.33 |
-0.25 |
19.1 |
85 |
2 |
4 |
2 |
2 |
1 |
0 |
0 |
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19 |
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1.19 |
1.26 |
21.2 |
-1.12 |
-0.16 |
17.2 |
83 |
2 |
3 |
2 |
2 |
1 |
0 |
0 |
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20 |
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1.23 |
1.30 |
20.2 |
-0.94 |
-0.10 |
14.7 |
86 |
2 |
2 |
2 |
2 |
1 |
0 |
0 |
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21 |
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1.16 |
1.25 |
26.0 |
-1.41 |
-0.26 |
18.7 |
85 |
2 |
3 |
2 |
2 |
1 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program