PDBsum entry 2d2d Go to PDB code:  Tunnel analysis for: 2d2d calculated with MOLE 2.0 PDB id 2d2d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.66 1.66 26.4 -1.73 -0.51 24.0 87 4 2 2 2 1 0 0   2 1.69 1.69 30.0 -1.51 -0.57 20.0 87 4 3 2 2 1 0 0   3 1.66 1.66 34.2 -1.54 -0.71 18.7 80 4 3 1 1 1 0 0   4 1.67 1.67 42.2 -1.85 -0.67 20.9 85 5 3 3 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.