PDBsum entry 2d06 Go to PDB code:  Tunnel analysis for: 2d06 calculated with MOLE 2.0 PDB id 2d06 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.57 1.67 24.1 -1.40 -0.01 17.6 75 5 1 2 1 3 1 0  A3P 2002 B 2 1.17 1.89 29.1 -1.60 -0.12 21.7 77 5 2 2 2 3 1 0  A3P 2002 B 3 1.59 1.59 34.1 -0.36 0.27 16.8 74 6 1 1 3 7 1 0  EST 305 B A3P 2002 B 4 1.18 1.90 39.1 -0.66 0.16 19.3 76 6 2 1 4 7 1 0  EST 305 B A3P 2002 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.